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Ticket Resolution Summary Owner Reporter
#51 wontfix LSL build problem Jayce Dowell Jayce Dowell
Description

Ted reports:

I am having problems installing LSL on my macbook (10.7.5). I think the problem is with OpenMP/Clang support, but I am just guessing at this point. Perhaps you can point me in the right direction?

The error messages are:

jaegetr1-ml1:lsl-1.0.0 jaegetr1$ python setup.py build
WARNING:  OpenMP does not appear to be supported by cc, disabling
running build
running build_py
copying lsl/version.py -> build/lib.macosx-10.7-intel-2.7/lsl
running egg_info
writing requirements to lsl.egg-info/requires.txt
writing lsl.egg-info/PKG-INFO
writing top-level names to lsl.egg-info/top_level.txt
writing dependency_links to lsl.egg-info/dependency_links.txt
reading manifest file 'lsl.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*~' found anywhere in distribution
warning: no previously-included files matching '*.bak' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.o' found anywhere in distribution
warning: no previously-included files matching '*.d' found anywhere in distribution
writing manifest file 'lsl.egg-info/SOURCES.txt'
running build_ext
building 'correlator._spec' extension
clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c lsl/correlator/spec.c -o build/temp.macosx-10.7-intel-2.7/lsl/correlator/spec.o -I/usr/local/Cellar/fftw/3.3.3/include
lsl/correlator/spec.c:132:11: error: subscripted value is not an array, pointer, or vector
                                        in[k][0] = (double) *(a + secStart + k);
                                        ~~~~~^~
lsl/correlator/spec.c:133:11: error: subscripted value is not an array, pointer, or vector
                                        in[k][1] = 0.0;
                                        ~~~~~^~
lsl/correlator/spec.c:135:13: error: subscripted value is not an array, pointer, or vector
                                        in[k+1][0] = (double) *(a + secStart + k+1);
                                        ~~~~~~~^~
lsl/correlator/spec.c:136:13: error: subscripted value is not an array, pointer, or vector
                                        in[k+1][1] = 0.0;
                                        ~~~~~~~^~
lsl/correlator/spec.c:138:24: error: subscripted value is not an array, pointer, or vector
                                        if( Clip && (in[k][0] >= Clip || in[k][0] <= -Clip) ) {
                                                     ~~~~~^~
lsl/correlator/spec.c:138:44: error: subscripted value is not an array, pointer, or vector
                                        if( Clip && (in[k][0] >= Clip || in[k][0] <= -Clip) ) {
                                                                         ~~~~~^~
lsl/correlator/spec.c:141:26: error: subscripted value is not an array, pointer, or vector
                                        if( Clip && (in[k+1][0] >= Clip || in[k+1][0] <= -Clip) ) {
                                                     ~~~~~~~^~
lsl/correlator/spec.c:141:48: error: subscripted value is not an array, pointer, or vector
                                        if( Clip && (in[k+1][0] >= Clip || in[k+1][0] <= -Clip) ) {
                                                                           ~~~~~~~^~
lsl/correlator/spec.c:150:52: error: subscripted value is not an array, pointer, or vector
                                        *(b + nChan*i + k) += cleanFactor*in[fftIndex][0]*in[fftIndex][0];
                                                                          ~~~~~~~~~~~~^~
lsl/correlator/spec.c:150:68: error: subscripted value is not an array, pointer, or vector
                                        *(b + nChan*i + k) += cleanFactor*in[fftIndex][0]*in[fftIndex][0];
                                                                                          ~~~~~~~~~~~~^~
lsl/correlator/spec.c:151:52: error: subscripted value is not an array, pointer, or vector
                                        *(b + nChan*i + k) += cleanFactor*in[fftIndex][1]*in[fftIndex][1];
                                                                          ~~~~~~~~~~~~^~
lsl/correlator/spec.c:151:68: error: subscripted value is not an array, pointer, or vector
                                        *(b + nChan*i + k) += cleanFactor*in[fftIndex][1]*in[fftIndex][1];
                                                                                          ~~~~~~~~~~~~^~
lsl/correlator/spec.c:279:11: error: subscripted value is not an array, pointer, or vector
                                        in[k][0] = (double) *(a + secStart + k) * *(c + k);
                                        ~~~~~^~
lsl/correlator/spec.c:280:11: error: subscripted value is not an array, pointer, or vector
                                        in[k][1] = 0.0;
                                        ~~~~~^~
lsl/correlator/spec.c:282:13: error: subscripted value is not an array, pointer, or vector
                                        in[k+1][0] = (double) *(a + secStart + k+1) * *(c + k+1);
                                        ~~~~~~~^~
lsl/correlator/spec.c:283:13: error: subscripted value is not an array, pointer, or vector
                                        in[k+1][1] = 0.0;
                                        ~~~~~~~^~
lsl/correlator/spec.c:297:52: error: subscripted value is not an array, pointer, or vector
                                        *(b + nChan*i + k) += cleanFactor*in[fftIndex][0]*in[fftIndex][0];
                                                                          ~~~~~~~~~~~~^~
lsl/correlator/spec.c:297:68: error: subscripted value is not an array, pointer, or vector
                                        *(b + nChan*i + k) += cleanFactor*in[fftIndex][0]*in[fftIndex][0];
                                                                                          ~~~~~~~~~~~~^~
lsl/correlator/spec.c:298:52: error: subscripted value is not an array, pointer, or vector
                                        *(b + nChan*i + k) += cleanFactor*in[fftIndex][1]*in[fftIndex][1];
                                                                          ~~~~~~~~~~~~^~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
error: command 'clang' failed with exit status 1
#50 fixed Fix fringeSDF.py for dipole-dipole experiments Jayce Dowell Jayce Dowell
Description

Frank pointed out that current version of fringeSDF.py does not produce the correct SDF for a dipole-dipole experiment; the gains are wrong.

#49 fixed shiftSDF.py problem Jayce Dowell Jayce Dowell
Description

Joe reports:

I'm trying to shift your files on MCS ~/lsl/SessionSchedules

Traceback (most recent call last):
  File "shiftSDF.py", line 459, in <module>
    main(sys.argv[1:])
  File "shiftSDF.py", line 359, in main
    if project.projectOffice.sessions[0].find('Position Shift? Yes') != -1:
AttributeError: 'NoneType' object has no attribute 'find'


here's the line I'm running:

python shiftSDF.py -t 16:00:00 -d 2013/03/22 -l \
     ~/MCS/tp/130322/COMJD_130322_1401_2.txt \
     ~/MCS/tp/130322/COMJD_130322_1600_2.txt

It looks like this could be related to the recent changes to the lsl.common.sdf module's parser but I'm not sure.

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